sci-biology/sibsim4: new package (bug 175143)

svn path=/sunrise/; revision=3482

diff --git a/sci-biology/sibsim4/ChangeLog b/sci-biology/sibsim4/ChangeLog
new file mode 100644 (file)
index 0000000..de5cd8f
--- /dev/null
+++ b/sci-biology/sibsim4/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/sibsim4
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  18 Apr 2007; AK <gentoo@horizon.ath.cx> +sibsim4-0.14.ebuild,
+  +metadata.xml:
+  new package (bug 175143)
+

diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest
new file mode 100644 (file)
index 0000000..542d389
--- /dev/null
+++ b/sci-biology/sibsim4/Manifest
@@ -0,0 +1,16 @@
+DIST SIBsim4-0.14.tar.gz 28956 RMD160 7e54d8973d750d80516c3cc2ce358230e3e8c4cf SHA1 ee4215b191b494074df4fe33088097e00e789393 SHA256 15c0493ddc21cb4086bcc2f72d6e7ac470256cd8d87605de359b59a853fb9596
+EBUILD sibsim4-0.14.ebuild 542 RMD160 272b1b10dbd5346f28615b60b3293084da1c968e SHA1 3ec8dd7a03def6ffca466ab4cb1c104694708834 SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b
+MD5 05729babe5c14d6cb34049e7d9de7696 sibsim4-0.14.ebuild 542
+RMD160 272b1b10dbd5346f28615b60b3293084da1c968e sibsim4-0.14.ebuild 542
+SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b sibsim4-0.14.ebuild 542
+MISC ChangeLog 229 RMD160 85fc45e7bb0df1aa5d4280eba59216f6786d603f SHA1 1a01618488d7061d7e3c0c57a54a0c4a52b48182 SHA256 90e89540c4c351bdd8ea277a682c5c3162cfd0c8ff92c5d1cf7f715a5f71f4a9
+MD5 03ea6cf5c910776ec29b873664759a80 ChangeLog 229
+RMD160 85fc45e7bb0df1aa5d4280eba59216f6786d603f ChangeLog 229
+SHA256 90e89540c4c351bdd8ea277a682c5c3162cfd0c8ff92c5d1cf7f715a5f71f4a9 ChangeLog 229
+MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
+MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
+RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
+SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
+MD5 800b79024b4b386017dac71d76999d9f files/digest-sibsim4-0.14 235
+RMD160 7744aa21f20c76c2038c18d72045cffdd8467b45 files/digest-sibsim4-0.14 235
+SHA256 93ae4b12c5399bb383e443a5a1ef2c44bdac1ffcc2b014d819fef71c077ead08 files/digest-sibsim4-0.14 235

diff --git a/sci-biology/sibsim4/files/digest-sibsim4-0.14 b/sci-biology/sibsim4/files/digest-sibsim4-0.14
new file mode 100644 (file)
index 0000000..a431daa
--- /dev/null
+++ b/sci-biology/sibsim4/files/digest-sibsim4-0.14
@@ -0,0 +1,3 @@
+MD5 b63af91d9cacf7d4f557d72119f934e5 SIBsim4-0.14.tar.gz 28956
+RMD160 7e54d8973d750d80516c3cc2ce358230e3e8c4cf SIBsim4-0.14.tar.gz 28956
+SHA256 15c0493ddc21cb4086bcc2f72d6e7ac470256cd8d87605de359b59a853fb9596 SIBsim4-0.14.tar.gz 28956

diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml
new file mode 100644 (file)
index 0000000..7e32869
--- /dev/null
+++ b/sci-biology/sibsim4/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>maintainer-wanted</herd>
+</pkgmetadata>

diff --git a/sci-biology/sibsim4/sibsim4-0.14.ebuild b/sci-biology/sibsim4/sibsim4-0.14.ebuild
new file mode 100644 (file)
index 0000000..64ada61
--- /dev/null
+++ b/sci-biology/sibsim4/sibsim4-0.14.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner"
+HOMEPAGE="http://sibsim4.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/SIBsim4-${PV}"
+
+src_unpack() {
+       unpack ${A}
+       sed -i 's/CFLAGS = \(.*\)/CFLAGS := \1 ${CFLAGS}/' ${S}/Makefile
+}
+
+src_install() {
+       dobin SIBsim4
+       doman SIBsim4.1
+}