sci-biology/tigr-assembler: new package (bug 175282)

svn path=/sunrise/; revision=3485

diff --git a/sci-biology/tigr-assembler/ChangeLog b/sci-biology/tigr-assembler/ChangeLog
new file mode 100644 (file)
index 0000000..2ebe54f
--- /dev/null
+++ b/sci-biology/tigr-assembler/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/tigr-assembler
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  19 Apr 2007; AK <gentoo@horizon.ath.cx> +tigr-assembler-2.0.ebuild,
+  +metadata.xml:
+  new package (bug 175282)
+

diff --git a/sci-biology/tigr-assembler/Manifest b/sci-biology/tigr-assembler/Manifest
new file mode 100644 (file)
index 0000000..ff2a640
--- /dev/null
+++ b/sci-biology/tigr-assembler/Manifest
@@ -0,0 +1,16 @@
+DIST TIGR_Assembler_v2.tar.gz 3252950 RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 SHA1 8bd1886eb33d203598ac03decc7798a1fa0d85d7 SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42
+EBUILD tigr-assembler-2.0.ebuild 613 RMD160 eebd4f86c8766c5e09e7d3f7cb96d6d8f93786dc SHA1 20308417edeb46b0df768d68494d352a1c938f55 SHA256 2aca01cc8546f22ec76d96cb8235d381cd09dfbf639b5742e5473a2f9bd137aa
+MD5 95f9ca343ace36d10719b2f7a92bd69d tigr-assembler-2.0.ebuild 613
+RMD160 eebd4f86c8766c5e09e7d3f7cb96d6d8f93786dc tigr-assembler-2.0.ebuild 613
+SHA256 2aca01cc8546f22ec76d96cb8235d381cd09dfbf639b5742e5473a2f9bd137aa tigr-assembler-2.0.ebuild 613
+MISC ChangeLog 242 RMD160 ee8f9f7656248cde243f1debe12147d01385dc43 SHA1 a418c094a3784062c1895a5cf1344edbc209c6e3 SHA256 f6d763d7734596309fa10ad8df569d866c62a1f0f572c38fe2a06db6be044b3c
+MD5 1b3552b6ca9ca0b5bf88def285a5925f ChangeLog 242
+RMD160 ee8f9f7656248cde243f1debe12147d01385dc43 ChangeLog 242
+SHA256 f6d763d7734596309fa10ad8df569d866c62a1f0f572c38fe2a06db6be044b3c ChangeLog 242
+MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
+MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
+RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
+SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
+MD5 34ea976ee140a76384b08b8d33f832b0 files/digest-tigr-assembler-2.0 256
+RMD160 88adcd5f128ee53e27bef0bfef88f7e45e11344d files/digest-tigr-assembler-2.0 256
+SHA256 240d7e7304c146d042614059a62e89a5a4911483cba0c8895731f1aadbcffdf2 files/digest-tigr-assembler-2.0 256

diff --git a/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 b/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0
new file mode 100644 (file)
index 0000000..738d485
--- /dev/null
+++ b/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0
@@ -0,0 +1,3 @@
+MD5 70b56f15fc9e44436abf67ca8ba909fa TIGR_Assembler_v2.tar.gz 3252950
+RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 TIGR_Assembler_v2.tar.gz 3252950
+SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42 TIGR_Assembler_v2.tar.gz 3252950

diff --git a/sci-biology/tigr-assembler/metadata.xml b/sci-biology/tigr-assembler/metadata.xml
new file mode 100644 (file)
index 0000000..7e32869
--- /dev/null
+++ b/sci-biology/tigr-assembler/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>maintainer-wanted</herd>
+</pkgmetadata>

diff --git a/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild b/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild
new file mode 100644 (file)
index 0000000..5a8746b
--- /dev/null
+++ b/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="Whole-genome shotgun assembler from TIGR"
+HOMEPAGE="http://www.tigr.org/software/assembler/"
+SRC_URI="ftp://ftp.tigr.org/pub/software/assembler/TIGR_Assembler_v2.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/TIGR_Assembler_v2"
+
+src_compile() {
+       sed -i 's/CFLAGS  = -O/CFLAGS := -O ${CFLAGS}/' "${S}/src/Makefile"
+       cd "${S}/src"
+       emake || die "emake failed"
+}
+
+src_install() {
+       dobin bin/{run_TA,TIGR_Assembler}
+       dodoc README
+}