sci-biology/repeatmasker: in gentoo-x86

svn path=/sunrise/; revision=7980

diff --git a/sci-biology/repeatmasker/ChangeLog b/sci-biology/repeatmasker/ChangeLog
deleted file mode 100644 (file)
index 28a7052..0000000
--- a/sci-biology/repeatmasker/ChangeLog
+++ /dev/null
@@ -1,20 +0,0 @@
-# ChangeLog for sci-biology/repeatmasker
-# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  04 Aug 2008; Tiago Cunha (tcunha) <me@tiagocunha.org>
-  repeatmasker-3.1.8.ebuild:
-  Don't dodoc INSTALL
-
-  09 Nov 2007; azazello <gentoo@horizon.ath.cx> -repeatmasker-3.1.7.ebuild,
-  +repeatmasker-3.1.8.ebuild:
-  version bump
-
-  25 Apr 2007; Stefan Schweizer <genstef@gentoo.org>
-  repeatmasker-3.1.7.ebuild:
-  dodir is not needed because insinto creates the dir
-
-  20 Apr 2007; AK <gentoo@horizon.ath.cx> +repeatmasker-3.1.7.ebuild,
-  +metadata.xml:
-  new package (bug 114096)
-

diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
deleted file mode 100644 (file)
index ebcbc1e..0000000
--- a/sci-biology/repeatmasker/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST RepeatMasker-open-3-1-8.tar.gz 9045872 RMD160 eba049275995113598e86c1d827205addb010fe2 SHA1 bc81838fead280ddb1c986c35735bcfe66ae61be SHA256 11c7aedcf8c01e23eecb77ca2948f12bfd9dd3de21d1811205e0f3adc59c4c13
-EBUILD repeatmasker-3.1.8.ebuild 1221 RMD160 e9cae7feece5cb4b62a799884c7a7d6dbdf50633 SHA1 92c0ebdf8eb340ebe449c7c9d55b9b7fea8192b2 SHA256 8f1f6ddd2503ab2ff70a6a5d9016699010ac646fa75558cb68b11ff5341836cb
-MISC ChangeLog 607 RMD160 53d6f7adbb9612f78f47e80a967750ae05ee210a SHA1 67fbbe448e2bd0fcc42e7b215b203970d13ef846 SHA256 04d634d6adf292399af3cbc37e62d7b9a972bdd5d1c59f451d2da70dc0b231ea
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42

diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml
deleted file mode 100644 (file)
index 7e32869..0000000
--- a/sci-biology/repeatmasker/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>

diff --git a/sci-biology/repeatmasker/repeatmasker-3.1.8.ebuild b/sci-biology/repeatmasker/repeatmasker-3.1.8.ebuild
deleted file mode 100644 (file)
index 5075b38..0000000
--- a/sci-biology/repeatmasker/repeatmasker-3.1.8.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="sci-biology/phrap
-       sci-biology/repeatmasker-libraries"
-
-S="${WORKDIR}/RepeatMasker"
-
-src_compile() {
-       sed -i 's/system( "clear" );//' "${S}/configure"
-       cat << END | "${S}/configure" || die "configure failed"
-
-/usr/bin
-/usr/share/${PN}
-1
-/usr/bin
-Y
-4
-END
-       sed -i '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}/RepeatMaskerConfig.pm" || die "sed failed"
-       sed -i 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker} || die "sed failed"
-}
-
-src_install() {
-       dobin DateRepeats ProcessRepeats RepeatMasker
-
-       insinto /usr/share/${PN}/lib
-       doins "${S}"/*.pm
-
-       insinto /usr/share/${PN}
-       doins -r util Matrices
-       keepdir /usr/share/${PN}/Libraries
-
-       dodoc README repeatmasker.help daterepeats.help
-}