sci-biology/kalign: New Ebuild for bug 175116

svn path=/sunrise/; revision=3479

diff --git a/sci-biology/kalign/ChangeLog b/sci-biology/kalign/ChangeLog
new file mode 100644 (file)
index 0000000..80d8328
--- /dev/null
+++ b/sci-biology/kalign/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/kalign
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  18 Apr 2007; AK <gentoo@horizon.ath.cx> +kalign-2.03.ebuild,
+  +metadata.xml:
+  New Ebuild for bug 175116
+

diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest
new file mode 100644 (file)
index 0000000..e62a700
--- /dev/null
+++ b/sci-biology/kalign/Manifest
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+DIST kalign_2.03.orig.tar.gz 114022 RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd SHA1 c856d14b537a9139fc601e4de98870293a3aceb4 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0
+EBUILD kalign-2.03.ebuild 529 RMD160 02c6f1a4019b664be2263a9d03aec13c36c5e4aa SHA1 adfa98b67fe55fd56f3b767b39cb7c1d8e730355 SHA256 959b57056021948137f09c1404423e82e0e4ac30f274b942c2a110a20a22e6cf
+MD5 8ac9cdf7c3106dedd256682e711cf51f kalign-2.03.ebuild 529
+RMD160 02c6f1a4019b664be2263a9d03aec13c36c5e4aa kalign-2.03.ebuild 529
+SHA256 959b57056021948137f09c1404423e82e0e4ac30f274b942c2a110a20a22e6cf kalign-2.03.ebuild 529
+MISC ChangeLog 228 RMD160 89887099dd6f560574dffc2214798e2d6c9997fc SHA1 58ee22b7bc635898a7297ae984d3d392eeabc4b9 SHA256 b5ef507358edd3a44c9d9243c06f262cb8c9a4df9ce8c36ce8569b95beb13ad1
+MD5 36b76237cb2c0b7a4ff415be975adc78 ChangeLog 228
+RMD160 89887099dd6f560574dffc2214798e2d6c9997fc ChangeLog 228
+SHA256 b5ef507358edd3a44c9d9243c06f262cb8c9a4df9ce8c36ce8569b95beb13ad1 ChangeLog 228
+MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
+MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
+RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
+SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
+MD5 d84ac9676b1c40aa1a4a60dc45844ce3 files/digest-kalign-2.03 250
+RMD160 411b63d9fbd2948186ab62bb8e46ca8d1d3da690 files/digest-kalign-2.03 250
+SHA256 3956c75c0783a86fe6059bbc8c71ef2f98a9a1e61966eee3f142bc08f69cbcfe files/digest-kalign-2.03 250

diff --git a/sci-biology/kalign/files/digest-kalign-2.03 b/sci-biology/kalign/files/digest-kalign-2.03
new file mode 100644 (file)
index 0000000..a292b31
--- /dev/null
+++ b/sci-biology/kalign/files/digest-kalign-2.03
@@ -0,0 +1,3 @@
+MD5 7ad1642cbb1853528c40d0fe6f235fce kalign_2.03.orig.tar.gz 114022
+RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd kalign_2.03.orig.tar.gz 114022
+SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0 kalign_2.03.orig.tar.gz 114022

diff --git a/sci-biology/kalign/kalign-2.03.ebuild b/sci-biology/kalign/kalign-2.03.ebuild
new file mode 100644 (file)
index 0000000..5d77c3a
--- /dev/null
+++ b/sci-biology/kalign/kalign-2.03.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="Global and progressive multiple sequence alignment"
+HOMEPAGE="http://msa.cgb.ki.se/"
+SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/${PN}"
+
+src_unpack() {
+       unpack ${A}
+       sed -i 's/^CFLAGS.*= -O9/CFLAGS := ${CFLAGS} -O3/' ${S}/Makefile.in
+}
+
+src_install() {
+       dobin kalign
+       dodoc README
+}

diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml
new file mode 100644 (file)
index 0000000..7e32869
--- /dev/null
+++ b/sci-biology/kalign/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>maintainer-wanted</herd>
+</pkgmetadata>