sci-biology/glimmerhmm: In gentoo-x86

svn path=/sunrise/; revision=7031

diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog
deleted file mode 100644 (file)
index a0ce066..0000000
--- a/sci-biology/glimmerhmm/ChangeLog
+++ /dev/null
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-# ChangeLog for sci-biology/glimmerhmm
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  15 Mar 2007; Christian Faulhammer <opfer@gentoo.org>
-  glimmerhmm-3.0.1.ebuild:
-  Orthographic sex-up
-
-  14 Mar 2007; AK <gentoo@horizon.ath.cx> +glimmerhmm-3.0.1.ebuild,
-  +metadata.xml:
-  new package sci-biology/glimmerhmm (bug 170964)
-

diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest
deleted file mode 100644 (file)
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--- a/sci-biology/glimmerhmm/Manifest
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-DIST GlimmerHMM-3.0.1.tar.gz 45475952 RMD160 273cb74458e3f444cd9f8ca9f6618335aea5465f SHA1 6caf10a3fb79660e48d88560869dee0394961f1a SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4
-EBUILD glimmerhmm-3.0.1.ebuild 1209 RMD160 6793f2915f21cae7adbe12600fc92ead026b5694 SHA1 a0a2af322513410f59833004f0add9709f8d0cde SHA256 0dc071e77aea3aeb7d0a1a561ee36961fbf94d0f2859e9a4fdfa1c7f09d8c0ab
-MISC ChangeLog 364 RMD160 0bc9938c83818eb6865ede419df75e7df6ab68a4 SHA1 b86f62f8e1e09eed4cbf25cfac333602d3bfa417 SHA256 a43485f2129b6d5330107ef9cf26acfd44533a0a279748d8bda858e0935b8077
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42

diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
deleted file mode 100644 (file)
index 636cbbd..0000000
--- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
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-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-MY_PN="GlimmerHMM"
-
-DESCRIPTION="An eukaryotic gene finding system from TIGR"
-HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
-SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S=${WORKDIR}/${MY_PN}
-
-src_compile() {
-       sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \
-               -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed"
-       sed -i 's/^CFLAGS[ ]*=.*//' */makefile
-
-       cd sources
-       emake || die "emake failed in sources"
-       cd "${S}/train" || die "failed to cd"
-       emake || die "emake failed in train"
-}
-
-src_install() {
-       dobin sources/glimmerhmm train/trainGlimmerHMM
-
-       insinto /usr/share/${PN}/lib
-       doins train/*.pm
-       insinto /usr/share/${PN}/models
-       doins -r trained_dir/*
-       insinto /usr/share/${PN}/training_utils
-       insopts -m755
-       doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
-
-       dodoc README.first train/readme.train
-}

diff --git a/sci-biology/glimmerhmm/metadata.xml b/sci-biology/glimmerhmm/metadata.xml
deleted file mode 100644 (file)
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--- a/sci-biology/glimmerhmm/metadata.xml
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@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>