Pileus Git - ~andy/sunrise/blob - sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild

   1 # Copyright 1999-2007 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Header: $
   4
   5 MY_P=GlimmerHMM
   6
   7 DESCRIPTION="An eukaryotic gene finding system from TIGR"
   8 HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
   9 SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz"
  10
  11 LICENSE="Artistic"
  12 SLOT="0"
  13 IUSE=""
  14 KEYWORDS="~x86"
  15
  16 DEPEND=""
  17 RDEPEND=""
  18
  19 S=${WORKDIR}/${MY_P}
  20
  21 src_compile() {
  22         sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \
  23                 -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed"
  24         sed -i 's/^CFLAGS[ ]*=.*//' */makefile
  25
  26         cd sources
  27         emake || die "emake failed in sources"
  28         cd "${S}/train" || die "failed to cd"
  29         emake || die "emake failed in train"
  30 }
  31
  32 src_install() {
  33         dobin sources/glimmerhmm train/trainGlimmerHMM
  34
  35         dodir /usr/share/${PN}/{lib,models,training_utils}
  36         insinto /usr/share/${PN}/lib
  37         doins train/*.pm
  38         insinto /usr/share/${PN}/models
  39         doins -r trained_dir/*
  40         insinto /usr/share/${PN}/training_utils
  41         insopts -m755
  42         doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
  43
  44         dodoc README.first train/readme.train
  45 }