Pileus Git - ~andy/sunrise/blob - sci-biology/repeatmasker/repeatmasker-3.1.8.ebuild

   1 # Copyright 1999-2008 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Header: $
   4
   5 inherit versionator
   6
   7 MY_PV=$(replace_all_version_separators '-')
   8
   9 DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
  10 HOMEPAGE="http://repeatmasker.org/"
  11 SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
  12
  13 LICENSE="OSL-2.1"
  14 SLOT="0"
  15 KEYWORDS="~x86"
  16 IUSE=""
  17
  18 DEPEND=""
  19 RDEPEND="sci-biology/phrap
  20         sci-biology/repeatmasker-libraries"
  21
  22 S="${WORKDIR}/RepeatMasker"
  23
  24 src_compile() {
  25         sed -i 's/system( "clear" );//' "${S}/configure"
  26         cat << END | "${S}/configure" || die "configure failed"
  27
  28 /usr/bin
  29 /usr/share/${PN}
  30 1
  31 /usr/bin
  32 Y
  33 4
  34 END
  35         sed -i '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}/RepeatMaskerConfig.pm" || die "sed failed"
  36         sed -i 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker} || die "sed failed"
  37 }
  38
  39 src_install() {
  40         dobin DateRepeats ProcessRepeats RepeatMasker
  41
  42         insinto /usr/share/${PN}/lib
  43         doins "${S}"/*.pm
  44
  45         insinto /usr/share/${PN}
  46         doins -r util Matrices
  47         keepdir /usr/share/${PN}/Libraries
  48
  49         dodoc README repeatmasker.help daterepeats.help
  50 }